Payroll and Employment Taxes in Japan

Payroll taxes in Japan that are of key importance to employers include income tax withholding, social security contributions, and local inhabitant tax. Learn more about the processes for setting up payroll, calculating taxes, submitting payments compliantly, and adhering to due dates in Japan.

Iconic landmark in Japan

Capital City

Tokyo

Currency

Japanese Yen

(

¥

)

Timezone

GST

(

GST +9

)

Payroll

Monthly

Employment Cost

16.20%

Milani Notshe

Research Specialist

Last Updated

April 1, 2025

In This Guide

Leave The hiring to a local expert

Hire in Japan with ease—our experts handle employment and compliance for you.

Enquire Now

Overview of Payroll Taxes in Japan

Understanding payroll and employment taxes is essential for businesses operating in Japan, whether you're a small enterprise or a large corporation. Complying with tax regulations not only ensures legal adherence but also fosters positive employee relations. In Japan, employers must navigate various taxes, including income tax withholding, social security contributions, and local levies. Managing these taxes can be complex, with risks such as penalties and strained employee relations arising from non-compliance. This article aims to elucidate the key aspects of payroll taxes in Japan, covering calculations, deadlines, and filing procedures, while highlighting how requirements may vary based on location, income, or business size.

Types of Payroll Taxes in Japan

Japan's payroll system encompasses several taxes, each with distinct regulations that businesses must follow.

Income Tax Withholding

Income tax in Japan is progressive, with rates ranging from 5% to 45%, depending on income levels. Employers are responsible for withholding the appropriate amount from employees' salaries and remitting it to the tax authorities.

Key Deadlines and Penalties:

     
  • Deadlines: Monthly withholdings are due by the 10th of the following month.
  •  
  • Penalties: Late payments may incur delinquent tax charges.

Social Security Contributions

Social security contributions in Japan are shared between employers and employees and cover health insurance, pension plans, unemployment insurance, and work injury compensation.

Key Deadlines and Penalties:

     
  • Deadlines: Contributions are due monthly, with payments to be made by the end of the following month.
  •  
  • Penalties: Non-compliance can lead to fines and other legal consequences.

Local Inhabitant Tax

Local inhabitant tax is levied by municipal and prefectural governments and is based on the previous year's income. It consists of a per capita levy and an income-based levy.

Key Deadlines and Penalties:

     
  • Deadlines: Payments are typically withheld monthly and remitted by the 10th of the following month.
  •  
  • Penalties: Failure to comply can result in additional charges and legal action.

How To Set Up Payroll in Japan

Establishing a compliant payroll system in Japan is crucial for legal adherence and maintaining employee trust. This involves registering with relevant authorities, accurately calculating taxes, and adhering to reporting requirements.

Example Calculation

For an employee earning an annual salary of ¥5,000,000:

     
  • Income Tax: Calculated based on progressive tax rates.
  •  
  • Social Security Contributions: Both employer and employee contributions apply, with specific rates for health insurance, pension, and other insurances.
  •  
  • Local Inhabitant Tax: Based on the previous year's income, with rates varying by municipality.

Submitting Payroll Tax in Japan

     
  • Income Tax: Withheld monthly and paid to the tax office by the 10th of the following month.
  •  
  • Social Security Contributions: Paid monthly, with specific due dates for each type.
  •  
  • Local Inhabitant Tax: Withheld monthly and remitted to the local tax office by the 10th of the following month.

Payroll Tax Due Dates in Japan

Tax Type Due Date
Income Tax 10th of the following month
Social Security Contributions End of the following month
Local Inhabitant Tax 10th of the following month

Payroll Contributions in Japan

Understanding the tax obligations for both employers and employees is crucial when operating in Japan's business landscape. This section explains how taxes and statutory fees affect payroll and individual earnings in Japan.

Employer Tax Contributions

Employer payroll contributions are generally estimated at an additional 16.2% on top of the employee salary in Japan.

Tax Type Tax Rate
Pension (applied on salary up to 650,000 JPY per month) 0.0915
Health Insurance (applied on salary up to 1.39 million JPY per month). Each region has its own health insurance rate, and rates are slightly higher for individuals between the ages of 40 and 65 (generally 1.57%). 0.0499
Unemployment Insurance 0.006
Nursing Care Insurance (applied on salary up to 1.39 million JPY per month for individuals between age 40 and 64) 0.008
Family Allowance (applied on salary up to 650,000 JPY per month) 0.0036
Work Injury 0.003

Employee Payroll Tax Contributions

In Japan , the typical estimation for employee payroll contributions cost is around 15.34%.

Tax TypeTax Rate
Pension9.15%
Health Insurance (applied on salary up to 1.39 million JPY per month)4.99% (Each region has its own health insurance rate, and rates are slightly higher for individuals between the ages of 40 and 65)
Nursing Care Insurance (applied on salary up to 1.39M JPY per month)0.9%
Unemployment Insurance0.3%

Individual Income Tax Contributions

Japan's individual income tax ranges from 5% to 45% based on a progressive scale, influenced by factors like household status. Non-residents face a flat 20.42% national income tax with no deductions and potentially a 10% local inhabitant's tax if registered as residents by January 1st.

Income BracketTax Rate
0 - 1.95 million JPY5%
1.95 million JPY - 3.3 million JPY10%
3.3 million JPY - 6.95 million JPY20%
6.95 million JPY - 9 million JPY23%
9 million JPY - 18 million JPY33%
18 million JPY - 40 million JPY40%
40 million JPY And above45%

Pension in Japan

The retirement age is 65, and Japan has two pension programs: the National Pension and the Employees' Pension systems. Contributions from employers, employees, and the government collectively fund retirement benefits.

Managing Common Payroll Challenges in Japan

Global employers operating in Japan often encounter unique payroll challenges that can affect compliance and efficiency, like navigating evolving tax laws and managing employee data. With a need for real-time accuracy, modern organizations must develop strategies to overcome these challenges effectively. Below, we explore some of the most common payroll hurdles and provide actionable solutions to streamline payroll processes in Japan.

Maintaining Accurate and Detailed Payroll Reports

Maintaining accurate global payroll reports is often challenging due to currency exchange complexities, data integration issues, and the need to keep employee information up-to-date – including tax information, hours worked, leave balances, and any changes in salary or job status. Generating accurate reports is easy with a comprehensive payroll automation tool that consolidates fragmented data sources, and can keep track of employee payments and deductions.

Keeping Up With Ever-Changing Tax Laws & Compliance Laws

In Japan, tax laws and compliance regulations can change frequently, presenting a significant challenge for global employers. Monitoring updates to federal, state, and local tax codes is crucial to avoid non-compliance and costly penalties, but requires significant time and resources. Partnering with local experts or a reputable global HR platform is an effective way to maintain compliance. These services can help employers stay compliant with evolving regulations while freeing up time for more strategic work.

Consolidating Multi-Vendor Payroll Analytics

Managing payroll across multiple vendors often leads to fragmented data and inefficiencies, making it difficult to consolidate analytics. These challenges can hinder decision-making, especially when trying to gain a clear view of workforce costs and trends. To address this, organizations can invest in a centralized payroll management system that unifies data from multiple vendors. A consolidated platform simplifies payroll tracking, ensures data accuracy, and provides actionable insights into payroll expenditures.

Playroll's multi-vendor payroll analytics
With Playroll, you can easily consolidate multi-vendor payroll analytics in one place.

Integrating Multiple HR & Payroll Systems

Global companies are prone to using multiple HR or payroll systems across regions, which can easily lead to fragmented payroll data, increasing the risk of delays and errors in employee compensation. To combat this, seamless integration between payroll and other systems is critical.

Payroll management systems that connect with existing HR and financial platforms can help streamline workflows by reducing manual inputs and ensuring that all departments operate with up-to-date, accurate information. In turn, this helps guarantee on-time, accurate payroll, boosting employee satisfaction.

What Does a Global Payroll Management Platform Cover?

A global payroll management platform is a software solution designed to streamline and automate the payroll processes for organizations with employees across multiple countries. It helps ensure accurate and timely payment while maintaining compliance with legal and regulatory requirements in Japan.

Key functions of a payroll management platform can include:

  • Consolidate payroll data: Streamline fragmented payroll data into one source of truth when you’re operating in multiple regions.
  • Analytics and reporting: Advanced capabilities to analyze payroll data and generate automated reports per region.
  • Monitor and standardize payroll: Get an accurate view of employee costs, bonuses, and taxes per region, catch variances, and standardize payroll processes across regions to minimize errors.
  • Compliance and record-keeping: Maintains accurate payroll records and ensures adherence to labor laws and regulations, reducing the risk of legal issues.
  • Employee self-service: Provides portals where employees can access pay stubs, update personal information, and manage benefits selections.

How Playroll Can Streamline Payroll & Taxes in Japan

Expanding globally is an exciting milestone for any company, but it comes coupled with complex payroll challenges. It doesn’t have to be complicated. At Playroll, our easy-to-implement global payroll management software combines automation with hands-on support to make global payroll truly simple. Here's how Playroll helps:

  • Multi-Vendor Integration: Our platform syncs seamlessly with your providers and in-house systems to unify global payroll services in one platform.
  • Standardize Payroll Processes: Unify your operations in one dashboard to ensure payroll is running smoothly globally, with advanced approval flows and reports.
  • Improve Governance & Compliance: Improve compliance by centralizing all your compliance tasks and processes. Easily track your payment obligations, with digitized audit trails.
  • Advanced Reporting: Access and configure your data, your way, with a comprehensive suite of payroll analytics and reporting tools.

Disclaimer

THIS CONTENT IS FOR INFORMATIONAL PURPOSES ONLY AND DOES NOT CONSTITUTE LEGAL OR TAX ADVICE. You should always consult with and rely on your own legal and/or tax advisor(s). Playroll does not provide legal or tax advice. The information is general and not tailored to a specific company or workforce and does not reflect Playroll’s product delivery in any given jurisdiction. Playroll makes no representations or warranties concerning the accuracy, completeness, or timeliness of this information and shall have no liability arising out of or in connection with it, including any loss caused by use of, or reliance on, the information.

Author profile picture

ABOUT THE AUTHOR

Milani Notshe

Milani is a seasoned research and content specialist at Playroll, a leading Employer Of Record (EOR) provider. Backed by a strong background in Politics, Philosophy and Economics, she specializes in identifying emerging compliance and global HR trends to keep employers up to date on the global employment landscape.

Back to Top

Copied to Clipboard

FAQS

FAQs about Payroll in Japan

Questions and Answers

How do you calculate payroll taxes in Japan?

Payroll taxes in Japan are calculated based on an employee's gross income, applying progressive income tax rates, and mandatory social security contributions, which are split between employer and employee.

What are the payroll options for employers in Japan?

Employers can manage payroll internally, outsource to specialized payroll service providers, or partner with global Professional Employer Organizations (PEOs) to handle payroll and compliance.

What are the key elements of payroll in Japan?

Key elements include accurate calculation of income tax withholdings, proper remittance of social security contributions, adherence to local inhabitant tax regulations, and compliance with reporting requirements.

How much is payroll tax in Japan?

Payroll taxes encompass income tax, which is progressive up to 45%, and social security contributions, with employer and employee rates varying by category. Local inhabitant tax is also applicable, based on the previous year's income.